Healthy Spaghetti Squash Au Gratin
If you’re looking for a dish that feels like a warm hug on a plate, then this Healthy Spaghetti Squash Au Gratin is just what you need! It’s a delightful blend of cozy comfort food and healthy eating. With its rich and cheesy flavor, this recipe is perfect for busy weeknights when you want something nutritious without sacrificing taste. It’s also fantastic for family gatherings or holiday spreads when you’re looking to impress your guests with something deliciously different.
This dish is not only low-carb and gluten-free, but it’s also packed with wholesome ingredients that make it a guilt-free pleasure. Trust me, once you try it, you’ll want to keep this recipe in your regular rotation!
Why You’ll Love This Recipe
- Easy to make: This dish comes together in just about 85 minutes, making it perfect for both busy weeknights and leisurely weekends.
- Family-friendly: Even the pickiest eaters will love the cheesy goodness of this spaghetti squash au gratin!
- Make ahead: You can prepare the mixture in advance and bake it just before serving, making entertaining a breeze.
- Versatile: Enjoy it as a side dish or a light main course—it’s delicious either way!
- Loaded with flavor: The combination of sautéed onions, garlic, and sharp cheddar brings out rich flavors you’ll crave again and again.

Ingredients You’ll Need
Let’s gather some simple, wholesome ingredients that come together beautifully in this Healthy Spaghetti Squash Au Gratin. You probably have most of these in your kitchen already!
- 1 medium spaghetti squash
- 1 tbsp olive oil
- ½ cup diced onion
- 2 cloves garlic (minced)
- ½ cup plain Greek yogurt (or sour cream)
- 1½ cups shredded sharp cheddar cheese (divided)
- ¼ tsp salt
- ¼ tsp black pepper
- Optional: ¼ tsp paprika or dried thyme
Variations
One of the best things about this recipe is its flexibility! Feel free to make it your own with these fun variations:
- Add some greens: Toss in some fresh spinach or kale for an extra nutrient boost.
- Change up the cheese: Try using mozzarella for a milder flavor or pepper jack for a spicy kick.
- Mix in veggies: Add chopped bell peppers or mushrooms to the mix for added texture and flavor.
- Top it off: Sprinkle some breadcrumbs on top before baking for an extra crunchy finish.
How to Make Healthy Spaghetti Squash Au Gratin
Step 1: Roast the Spaghetti Squash
Preheat your oven to 400°F (205°C). Begin by slicing the spaghetti squash in half lengthwise and scooping out those pesky seeds. Brushing the cut sides with olive oil helps them caramelize while roasting. Place the squash face-down on a baking sheet and roast for 35–40 minutes, or until tender. This step is crucial because roasting enhances the natural sweetness of the squash.
Step 2: Sauté Onions and Garlic
While your squash roasts, heat a skillet over medium heat. Sauté the diced onions in a bit of olive oil until they soften—about five minutes should do it. Then add minced garlic and cook for one more minute. This not only brings out their sweetness but also adds depth to our dish.
Step 3: Shred the Squash
Once the roasted squash is cool enough to handle, grab a fork and shred it into noodle-like strands. This is where all that lovely texture comes from!
Step 4: Combine Ingredients
In a large bowl, mix together your shredded squash with the sautéed onions and garlic. Then add Greek yogurt (or sour cream), one cup of shredded cheese, salt, pepper, and optional spices like paprika or thyme. Stir everything well—this mixture is going to be creamy and delicious!
Step 5: Bake It Up
Transfer your cheesy mixture into a greased casserole dish and top with the remaining half cup of cheese. Bake at 375°F (190°C) for about 20–25 minutes until everything is hot and bubbly with a golden top. The aroma wafting through your kitchen will be irresistible!
Step 6: Serve and Enjoy
Let your Healthy Spaghetti Squash Au Gratin cool slightly before serving. Whether as a hearty side dish or as a light main course, everyone will enjoy this comforting meal!
Pro Tips for Making Healthy Spaghetti Squash Au Gratin
This dish is as delightful to make as it is to eat, and with these handy tips, you’ll create a masterpiece every time!
- Choose the right squash: Opt for a medium-sized spaghetti squash for ideal roasting. This size yields perfect strands without being too overwhelming or difficult to handle.
- Don’t skip the roasting: Roasting the squash face down helps it steam, making it tender and easier to shred into spaghetti-like strands. This step is crucial for achieving that perfect texture.
- Use fresh garlic and onions: Fresh ingredients enhance the flavors significantly compared to pre-packaged versions. The aromatic quality of fresh garlic and onions will elevate your dish to gourmet status!
- Experiment with cheese: Feel free to mix different types of cheese like mozzarella or gouda for a unique twist. Each cheese adds its own personality, making your au gratin even more delicious.
- Let it cool before serving: Allowing the dish to rest for a few minutes after baking helps it set up nicely, making it easier to serve and enjoy without making a mess!
How to Serve Healthy Spaghetti Squash Au Gratin
Serving this Healthy Spaghetti Squash Au Gratin can turn an ordinary meal into something truly special. Here are some delightful ways to present and enjoy this comforting dish!
Garnishes
- Chopped Fresh Herbs: A sprinkle of fresh parsley or chives adds vibrant color and a burst of freshness that complements the rich flavors beautifully.
- Crushed Red Pepper Flakes: For those who enjoy a bit of heat, a dash of red pepper flakes can give your au gratin an exciting kick.
Side Dishes
- Steamed Broccoli: Bright green broccoli florets add crunch and nutrients, creating a lovely contrast in both color and texture alongside your cheesy main dish.
- Mixed Green Salad: A simple salad with mixed greens, cherry tomatoes, and a light vinaigrette offers a refreshing balance to the creamy richness of the au gratin.
- Roasted Brussels Sprouts: The nutty flavor of roasted Brussels sprouts pairs wonderfully with the cheesy spaghetti squash, enhancing the overall comfort food experience.
- Garlic Bread: Crunchy garlic bread is always a crowd-pleaser! It’s perfect for soaking up any leftover cheesy goodness on your plate.
With these serving suggestions, your Healthy Spaghetti Squash Au Gratin will shine at any gathering or weeknight dinner! Enjoy every bite!

Make Ahead and Storage
This Healthy Spaghetti Squash Au Gratin is perfect for meal prep! You can easily make it ahead of time or store leftovers for delightful meals throughout the week.
Storing Leftovers
- Allow the dish to cool completely before storing.
- Transfer leftovers to an airtight container.
- Store in the refrigerator for up to 3-4 days.
Freezing
- To freeze, let the dish cool completely.
- Portion the au gratin into freezer-safe containers or bags.
- Label with the date and freeze for up to 2 months.
Reheating
- Thaw overnight in the refrigerator if frozen.
- Reheat in the oven at 350°F (175°C) until warmed through, about 20-30 minutes.
- For quicker reheating, use a microwave-safe dish and heat in short intervals, stirring occasionally.
FAQs
Here are some common questions that may help you with your Healthy Spaghetti Squash Au Gratin experience!
Can I make Healthy Spaghetti Squash Au Gratin without cheese?
Absolutely! While cheese adds creaminess, you can substitute it with nutritional yeast for a cheesy flavor without dairy.
How long does Healthy Spaghetti Squash Au Gratin last in the fridge?
When stored properly, this dish can last up to 3-4 days in the refrigerator. Just be sure to keep it in an airtight container!
Can I use a different type of yogurt in Healthy Spaghetti Squash Au Gratin?
Yes! You can replace Greek yogurt with any plain yogurt or plant-based yogurt alternative if you prefer.
Final Thoughts
I hope you enjoy making this Healthy Spaghetti Squash Au Gratin as much as I do! It’s truly a special recipe that combines comfort with healthy eating. Whether you’re serving it as a side dish or a light main course, it’s bound to bring smiles around your table. Don’t hesitate to try this out and let me know how it turns out—happy cooking!
Healthy Spaghetti Squash Au Gratin
If you’re searching for a dish that combines comfort and health, look no further than this Healthy Spaghetti Squash Au Gratin. This delightful recipe features a creamy blend of roasted spaghetti squash, sautéed onions, garlic, and sharp cheddar cheese, making it a deliciously nutritious option perfect for busy weeknights or special gatherings. Not only is it low-carb and gluten-free, but it’s also packed with flavor and makes for an impressive centerpiece on any table. Once you experience its cheesy goodness, you’ll want to add this dish to your regular meal rotation!
- Prep Time: 15 minutes
- Cook Time: 60 minutes
- Total Time: 1 hour 15 minutes
- Yield: Serves approximately 6 people 1x
- Category: Main
- Method: Baking
- Cuisine: American
Ingredients
- 1 medium spaghetti squash
- 1 tbsp olive oil
- ½ cup diced onion
- 2 cloves garlic (minced)
- ½ cup plain Greek yogurt (or sour cream)
- 1½ cups shredded sharp cheddar cheese (divided)
- ¼ tsp salt
- ¼ tsp black pepper
- Optional: ¼ tsp paprika or dried thyme
Instructions
- Preheat your oven to 400°F (205°C). Halve the spaghetti squash lengthwise, scoop out the seeds, and brush the cut sides with olive oil. Place face-down on a baking sheet and roast for 35–40 minutes until tender.
- In a skillet over medium heat, sauté diced onions in olive oil until softened (about five minutes), then add minced garlic and cook for one additional minute.
- Once the squash is cool enough to handle, shred it into noodle-like strands with a fork.
- In a large bowl, combine shredded squash with sautéed onions and garlic. Mix in Greek yogurt (or sour cream), one cup of cheese, salt, pepper, and optional spices.
- Transfer the mixture to a greased casserole dish and top with the remaining cheese. Bake at 375°F (190°C) for 20–25 minutes until bubbly and golden.
- Allow to cool slightly before serving.
Nutrition
- Serving Size: 1 serving
- Calories: 270
- Sugar: 3g
- Sodium: 420mg
- Fat: 15g
- Saturated Fat: 8g
- Unsaturated Fat: 6g
- Trans Fat: 0g
- Carbohydrates: 22g
- Fiber: 4g
- Protein: 14g
- Cholesterol: 35mg